| 9-Aug-03 | Doncaster Rovers | Home | League | 1-3 | Lockwood (pen) | 5194 | |
| 12-Aug-03 | Cardiff City | Away | LC r1 | 1-4 | Ibehre | 4503 | |
| 16-Aug-03 | Mansfield Town | Away | League | 1-1 | Alexander | 3920 | |
| 23-Aug-03 | Yeovil Town | Home | League | 2-0 | Brazier, Thorpe | 4431 | |
| 25-Aug-03 | Darlington | Away | League | 1-2 | Thorpe | 4660 | |
| 30-Aug-03 | Cheltenham Town | Home | League | 1-4 | Purser | 3785 | |
| 6-Sep-03 | Torquay United | Away | League | 1-2 | Newey | 2362 | |
| 13-Sep-03 | Lincoln City | Away | League | 0-0 | | 3940 | |
| 16-Sep-03 | Hull City | Home | League | 1-1 | Hunt | 3728 | |
| 20-Sep-03 | Scunthorpe United | Home | League | 1-1 | Ibehre | 3663 | |
| 27-Sep-03 | Huddersfield Town | Away | League | 0-3 | | 8942 | |
| 30-Sep-03 | Carlisle United | Away | League | 1-0 | Ibehre | 4650 | |
| 4-Oct-03 | Macclesfield Town | Home | League | 2-0 | Alexander, McGhee | 3585 | |
| 11-Oct-03 | Swansea City | Home | League | 1-2 | Tate | 4393 | |
| 15-Oct-03 | Dagenham & Redbridge | Away | LDV s.r1 | 1-4 | Lockwood (pen) | 1857 | |
| 18-Oct-03 | Southend United | Away | League | 2-1 | Alexander, McSweeney (og) | 6077 | |
| 21-Oct-03 | Bristol Rovers | Away | League | 1-1 | Ibehre | 5333 | |
| 25-Oct-03 | Northampton Town | Home | League | 1-1 | Alexander | 4130 | |
| 1-Nov-03 | Rochdale | Home | League | 2-1 | Lockwood (pen), Alexander | 3623 | |
| 8-Nov-03 | Grantham Town | Away | FAC r1 | 2-1 | Purser, Alexander | 2792 | |
| 15-Nov-03 | Boston United | Away | League | 0-3 | | 2619 | |
| 22-Nov-03 | York City | Home | League | 2-2 | Miller, Thorpe | 3593 | |
| 29-Nov-03 | Cambridge United | Away | League | 4-1 | Miller, Purser (2), Thorpe | 3910 | |
| 6-Dec-03 | Cheltenham Town | Away | FAC r2 | 1-3 | Lockwood | 3959 | |
| 13-Dec-03 | Kidderminster Harriers | Away | League | 1-2 | Zakuani | 2605 | |
| 20-Dec-03 | Bury | Home | League | 2-0 | Alexander, Zakuani | 3475 | |
| 26-Dec-03 | Oxford United | Away | League | 1-2 | Alexander | 9477 | |
| 28-Dec-03 | Torquay United | Home | League | 0-0 | | 4288 | |
| 3-Jan-04 | Darlington | Home | League | 1-0 | Toner | 3737 | |
| 10-Jan-04 | Doncaster Rovers | Away | League | 0-5 | | 6293 | |
| 17-Jan-04 | Mansfield Town | Home | League | 3-1 | Alexander (2), Newey | 4072 | |
| 24-Jan-04 | Yeovil Town | Away | League | 2-1 | Alexander, Peters | 6299 | |
| 31-Jan-04 | Cheltenham Town | Away | League | 0-1 | | 3336 | |
| 7-Feb-04 | Oxford United | Home | League | 1-0 | Alexander | 5433 | |
| 21-Feb-04 | Southend United | Home | League | 2-1 | Broughton (og), Bramble (og) | 6119 | |
| 24-Feb-04 | Swansea City | Away | League | 1-2 | Purser | 4727 | |
| 28-Feb-04 | Northampton Town | Away | League | 0-1 | | 5784 | |
| 2-Mar-04 | Bristol Rovers | Home | League | 1-1 | Ibehre | 3575 | |
| 6-Mar-04 | Bury | Away | League | 1-1 | Mackie | 2355 | |
| 13-Mar-04 | Kidderminster Harriers | Home | League | 1-1 | Alexander | 3764 | |
| 16-Mar-04 | Hull City | Away | League | 0-3 | | 15531 | |
| 20-Mar-04 | Lincoln City | Home | League | 0-2 | | 3637 | |
| 27-Mar-04 | Scunthorpe United | Away | League | 1-1 | Purser | 2822 | |
| 3-Apr-04 | Huddersfield Town | Home | League | 1-1 | Alexander | 4137 | |
| 10-Apr-04 | Macclesfield Town | Away | League | 0-1 | | 2156 | |
| 12-Apr-04 | Carlisle United | Home | League | 1-1 | Alexander | 4182 | |
| 17-Apr-04 | Rochdale | Away | League | 0-3 | | 2417 | |
| 24-Apr-04 | Boston United | Home | League | 1-3 | Scott | 3580 | |
| 1-May-04 | York City | Away | League | 2-1 | Alexander, Peters | 3462 | |
| 8-May-04 | Cambridge United | Home | League | 0-1 | | 5482 | |